Index

A

abandon() (ni.tools.project.Project method) (ni.tools.project.Session method) AdaptiveRateComponent (class in ni.model.designmatrix) add() (ni.model.designmatrix.DesignMatrix method) (ni.model.designmatrix.DesignMatrixTemplate method) (ni.tools.html_view.View method) add_job() (ni.tools.project.Session method) addCell() (ni.data.decoding_data.Trial method) addLinSpline() (ni.model.designmatrix.DesignMatrix method) addLogSpline() (ni.model.designmatrix.DesignMatrix method) addNode() (ni.tools.statcollector.StatCollector method)

addSpike() (ni.model.pointprocess.PointProcess method) addToNode() (ni.tools.statcollector.StatCollector method) append() (ni.tools.project.ListContainer method) (ni.tools.project.LogContainer method) (ni.tools.project.PickleContainer method) as_list_of_series() (ni.data.data.Data method) as_series() (ni.data.data.Data method) atoi() (in module ni.tools.html_view) (in module ni.tools.project) (in module ni.tools.statcollector) augknt() (in module ni.model.create_splines) autorun() (ni.tools.project.Project method)

B

backend (ni.model.ip.Model attribute) BareModel (class in ni.model) bootstrap() (in module ni.tools.bootstrap) (in module ni.tools.strap)

bootstrap_samples() (in module ni.tools.bootstrap) (in module ni.tools.strap) bootstrap_time() (in module ni.tools.bootstrap) (in module ni.tools.strap) bootstrap_trials() (in module ni.tools.bootstrap) (in module ni.tools.strap)

C

can_run() (ni.tools.project.Job method) Cell (class in ni.data.decoding_data) cell (ni.model.ip.Model attribute) cell() (ni.data.data.Data method) clear() (ni.tools.project.ListContainer method) (ni.tools.project.LogContainer method) (ni.tools.project.PickleContainer method) (ni.tools.project.Project method) clip() (ni.model.designmatrix.DesignMatrix method) close() (ni.tools.project.Figure method) combine() (ni.model.designmatrix.DesignMatrixTemplate method) compare() (in module ni.model.backend_elasticnet) (in module ni.model.backend_glm) (ni.model.ip.FittedModel method) (ni.model.ip.Model method) (ni.model.pointprocess.SimpleFiringRateModel method) complexity (ni.model.ip.FittedModel attribute) Component (class in ni.model.designmatrix)

computeCovariate() (in module ni.model.create_design_matrix_vk) condition() (ni.data.data.Data method) Configuration (class in ni.model.backend_elasticnet) (class in ni.model.backend_glm) (class in ni.model.ip) convolve_spikes() (in module ni.model.designmatrix) convolve_spikes_2d() (in module ni.model.designmatrix) create_design_matrix_vk() (in module ni.model.create_design_matrix_vk) create_splines() (in module ni.model.create_splines) create_splines_linspace() (in module ni.model.create_splines) create_splines_logspace() (in module ni.model.create_splines) createPoisson() (in module ni.model.pointprocess)

D

Data (class in ni.data.data) data (ni.model.net_sim.SimulationResult attribute) Data() (in module ni.data.monkey) dbg() (in module ni.tools.project) (ni.tools.project.Project method) DecodingData (class in ni.data.decoding_data) description() (in module ni.tools.bootstrap) (in module ni.tools.strap) DesignMatrix (class in ni.model.designmatrix)

DesignMatrixTemplate (class in ni.model.designmatrix) detKernels() (in module ni.model.create_design_matrix_vk) detModelOrder() (in module ni.model.create_design_matrix_vk) dm() (ni.model.ip.Model method) do_log() (in module ni.tools.project) (ni.tools.project.Project method) dumpheap() (in module ni.tools.project) (ni.tools.project.Project method) dumps() (ni.model.ip.FittedModel method)

E

err() (in module ni.tools.project) (ni.tools.project.Project method)

execute() (ni.tools.project.Project method) (ni.tools.project.Session method)

F

family_fitted_function() (ni.model.ip.FittedModel method) Figure (class in ni.tools.html_view) (class in ni.tools.project) figure() (in module ni.tools.project) (ni.tools.html_view.View method) filter() (ni.data.data.Data method) (ni.tools.statcollector.StatCollector method) find_jobs() (ni.tools.project.Session method) find_sessions() (ni.tools.project.Project method)

firing_rate() (ni.data.data.Data method) firing_rate_model() (ni.model.ip.FittedModel method) Fit (class in ni.model.backend_elasticnet) (class in ni.model.backend_glm) fit() (ni.model.backend_elasticnet.Model method) (ni.model.backend_glm.Model method) (ni.model.ip.Model method) (ni.model.pointprocess.SimpleFiringRateModel method) fit_with_design_matrix() (ni.model.ip.Model method) FittedModel (class in ni.model.ip)

G

generate() (in module ni.tools.bootstrap) (in module ni.tools.strap) (ni.model.ip.FittedModel method) generateDesignMatrix() (ni.model.ip.Model method) get() (in module ni.data.decoding_data) (ni.model.designmatrix.DesignMatrix method) (ni.model.designmatrix.DesignMatrixTemplate method) (ni.tools.statcollector.StatCollector method) get_components() (ni.model.designmatrix.DesignMatrixTemplate method) get_parameters_from_job_file() (ni.tools.project.Project method) get_session_status() (ni.tools.project.Project method) get_status() (ni.tools.project.Job method) (ni.tools.project.Session method) getBinary() (in module ni.model.pointprocess) getChildren() (ni.tools.statcollector.StatCollector method) getCounts() (in module ni.model.pointprocess) (ni.model.pointprocess.PointProcess method) getDimensions() (ni.tools.statcollector.StatCollector method) getFlattend() (ni.data.data.Data method)

getIndex() (ni.model.designmatrix.DesignMatrix method) (ni.model.designmatrix.DesignMatrixTemplate method) getList() (ni.tools.statcollector.StatCollector method) getMask() (ni.model.designmatrix.DesignMatrix method) (ni.model.designmatrix.DesignMatrixTemplate method) getMatrix() (ni.data.decoding_data.Trial method) getModelsOnPath() (ni.tools.statcollector.StatCollector method) getNode() (ni.tools.statcollector.StatCollector method) getParams() (ni.model.ip.FittedModel method) getProbability() (ni.model.pointprocess.PointProcess method) getPvalues() (ni.model.ip.FittedModel method) getSplines() (ni.model.designmatrix.AdaptiveRateComponent method) (ni.model.designmatrix.Component method) (ni.model.designmatrix.HistoryComponent method) (ni.model.designmatrix.RateComponent method) (ni.model.designmatrix.SecondOrderHistoryComponent method) getTree() (ni.tools.statcollector.StatCollector method)

H

has() (ni.tools.html_view.View method) HistoryComponent (class in ni.model.designmatrix)

HistoryDesignMatrix (class in ni.model.designmatrix) html_view() (ni.data.data.Data method) (ni.model.ip.FittedModel method) (ni.model.ip.Model method) (ni.tools.html_view.View method) (ni.tools.project.Job method) (ni.tools.project.Project method) (ni.tools.project.Session method) (ni.tools.statcollector.StatCollector method)

I

interspike_interval() (in module ni.model.pointprocess)

interspike_intervals() (ni.data.data.Data method)

J

Job (class in ni.tools.project) job() (in module ni.tools.project) (ni.tools.project.Project method)

job_activate() (ni.tools.project.Project method) job_done() (ni.tools.project.Project method)

K

keys() (ni.tools.statcollector.StatCollector method)

L

last_run() (ni.tools.project.Project method) less_running_than() (ni.tools.project.Project method) ListContainer (class in ni.tools.project) listToPath() (in module ni.tools.statcollector) load() (in module ni.tools.project) (ni.model.net_sim.Net method) (ni.tools.html_view.View method) (ni.tools.statcollector.StatCollector method) load_glob() (ni.tools.html_view.View method) (ni.tools.statcollector.StatCollector method)

load_list() (ni.tools.html_view.View method) (ni.tools.statcollector.StatCollector method) loadFromFile() (in module ni.data.data) loadList() (ni.tools.html_view.View method) (ni.tools.statcollector.StatCollector method) log() (in module ni.tools.project) (ni.tools.project.Project method) LogContainer (class in ni.tools.project) loglikelihood() (ni.model.pointprocess.SimpleFiringRateModel method)

M

matrix_to_dataframe() (in module ni.data.data) merge() (in module ni.data.data) (in module ni.tools.bootstrap) (in module ni.tools.strap)

Model (class in ni.model.backend_elasticnet) (class in ni.model.backend_glm) (class in ni.model.ip) msg() (ni.tools.project.Project method)

N

N() (in module ni.model.create_splines) natural_keys() (in module ni.tools.html_view) (in module ni.tools.project) (in module ni.tools.statcollector) natural_sorted() (in module ni.tools.html_view) (in module ni.tools.project) (in module ni.tools.statcollector) Net (class in ni.model.net_sim) next() (ni.tools.project.Project method) next_job() (ni.tools.project.Project method) (ni.tools.project.Session method) ni.data.data (module), [1] ni.data.decoding_data (module), [1] ni.data.monkey (module), [1] ni.model.backend_elasticnet (module), [1] ni.model.backend_glm (module), [1] ni.model.create_design_matrix_vk (module) ni.model.create_splines (module) ni.model.designmatrix (module), [1]

ni.model.ip (module), [1] ni.model.net_sim (module), [1] ni.model.pointprocess (module), [1] ni.tools.bootstrap (module), [1] ni.tools.html_view (module), [1] ni.tools.progressbar (module), [1] ni.tools.project (module), [1] ni.tools.statcollector (module), [1] ni.tools.strap (module), [1] nodes() (ni.tools.statcollector.StatCollector method) Nsec (ni.model.net_sim.SimulationConfiguration attribute) Ntime (ni.model.net_sim.SimulationConfiguration attribute) numCov() (in module ni.model.create_design_matrix_vk)

P

parse() (ni.tools.html_view.View method) parse_job_file() (ni.tools.project.Project method) (ni.tools.project.Session method) PickleContainer (class in ni.tools.project) plot() (ni.model.designmatrix.DesignMatrix method) (ni.model.net_sim.SimulationResult method) (ni.model.pointprocess.PointProcess method) plot_firing_rate_model() (ni.model.ip.FittedModel method) plot_firing_rates() (ni.model.net_sim.Net method) (ni.model.net_sim.SimulationResult method) plot_firing_rates_per_channel() (ni.model.net_sim.SimulationResult method) plot_interaction() (ni.model.net_sim.Net method) plot_prototypes() (ni.model.ip.FittedModel method) plotBootstrap() (in module ni.tools.bootstrap) (in module ni.tools.strap) plotCompareBootstrap() (in module ni.tools.bootstrap) (in module ni.tools.strap) plotGaussed() (in module ni.model.pointprocess) (ni.model.pointprocess.PointProcess method) plotHist() (ni.tools.statcollector.StatCollector method) plotMultiSpikes() (in module ni.model.pointprocess) plotParams() (ni.model.ip.FittedModel method)

plotTree() (ni.tools.statcollector.StatCollector method) PointProcess (class in ni.model.pointprocess) PointProcessFromSpikeTimes() (in module ni.model.pointprocess) predict() (in module ni.model.backend_elasticnet) (in module ni.model.backend_glm) (ni.model.backend_elasticnet.Fit method) (ni.model.backend_glm.Fit method) (ni.model.ip.FittedModel method) (ni.model.ip.Model method) (ni.model.pointprocess.SimpleFiringRateModel method) prefix() (ni.tools.statcollector.StatCollector method) print_job_status() (ni.tools.project.Project method) (ni.tools.project.Session method) print_long_job_status() (ni.tools.project.Project method) (ni.tools.project.Session method) process() (ni.tools.html_view.View method) progress() (in module ni.tools.progressbar) progress_end() (in module ni.tools.progressbar) progress_init() (in module ni.tools.progressbar) Project (class in ni.tools.project) prototypes() (ni.model.ip.FittedModel method) pull_from_inner_dict() (ni.tools.statcollector.StatCollector method) pvalues_by_component() (ni.model.ip.FittedModel method)

R

RateAndHistoryModel (class in ni.model) RateComponent (class in ni.model.designmatrix) RateModel (class in ni.model) re() (ni.tools.statcollector.StatCollector method) read_pickle() (ni.data.data.Data method) reduce_resolution() (ni.data.data.Data method) rename() (ni.tools.statcollector.StatCollector method) rename_value_to_tree() (ni.tools.statcollector.StatCollector method)

render() (ni.tools.html_view.View method) report() (in module ni.tools.project) (ni.tools.project.Project method) reportHTML() (ni.tools.project.Project method) require_job() (in module ni.tools.project) (ni.tools.project.Project method) reset_failed_jobs() (ni.tools.project.Project method) (ni.tools.project.Session method) reverse_correlation() (in module ni.model.pointprocess) run() (in module ni.tools.project) (ni.tools.project.Job method) (ni.tools.project.Project method)

S

save() (in module ni.tools.project) (ni.model.net_sim.Net method) (ni.tools.html_view.View method) (ni.tools.project.Job method) (ni.tools.project.Project method) (ni.tools.statcollector.StatCollector method) save_html() (ni.tools.project.Project method) (ni.tools.project.Session method) savefig() (ni.tools.html_view.View method) saveToFile() (in module ni.data.data) SecondOrderHistoryComponent (class in ni.model.designmatrix) select_session() (ni.tools.project.Project method) Session (class in ni.tools.project) set() (ni.tools.statcollector.StatCollector method) set_activity() (ni.tools.project.Job method) set_session_status() (ni.tools.project.Project method) set_status() (ni.tools.project.Job method) (ni.tools.project.Session method) setMask() (ni.model.designmatrix.DesignMatrix method) (ni.model.designmatrix.DesignMatrixTemplate method) setup_jobs() (ni.tools.project.Project method) (ni.tools.project.Session method) shape() (ni.data.data.Data method)

show() (ni.tools.project.Figure method) sibjob() (in module ni.tools.project) (ni.tools.project.Project method) SimpleFiringRateModel (class in ni.model.pointprocess) simulate() (in module ni.model.net_sim) (ni.model.net_sim.Net method) SimulationConfiguration (class in ni.model.net_sim) SimulationResult (class in ni.model.net_sim) spcol() (in module ni.model.create_splines) spline() (in module ni.model.create_splines) split() (ni.tools.statcollector.StatCollector method) StatCollector (class in ni.tools.statcollector) stopTimer() (ni.model.net_sim.SimulationResult method) store() (ni.model.net_sim.SimulationResult method) subjob() (in module ni.tools.project) (ni.tools.project.Project method) superjob() (in module ni.tools.project) (ni.tools.project.Project method)

T

TemporaryJob (class in ni.tools.project) TemporarySession (class in ni.tools.project) time() (ni.data.data.Data method)

to_pickle() (ni.data.data.Data method) Trial (class in ni.data.decoding_data) trial() (ni.data.data.Data method)

U

update() (ni.tools.project.Job method) update_job_files() (ni.tools.project.Session method) update_job_status() (ni.tools.project.Project method)

update_jobs() (ni.tools.project.Session method) upTriHalf() (in module ni.model.create_design_matrix_vk)

V

VariableContainer (class in ni.tools.project)

View (class in ni.tools.html_view)

X

x() (ni.model.ip.Model method)